Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DL800_RS03270 Genome accession   NZ_CP029692
Coordinates   339998..340474 (+) Length   158 a.a.
NCBI ID   WP_001186787.1    Uniprot ID   -
Organism   Escherichia coli strain SD134209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334998..345474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL800_RS03245 (DL800_03245) - 335782..336995 (+) 1214 WP_162829202.1 IS3-like element IS1203 family transposase -
  DL800_RS03250 (DL800_03250) - 337083..337493 (+) 411 WP_000642924.1 hypothetical protein -
  DL800_RS03255 (DL800_03255) - 337667..338497 (+) 831 WP_231437292.1 hypothetical protein -
  DL800_RS03260 (DL800_03260) - 338587..339405 (+) 819 WP_001234405.1 DUF932 domain-containing protein -
  DL800_RS03265 (DL800_03265) - 339497..339982 (+) 486 WP_000214420.1 antirestriction protein -
  DL800_RS03270 (DL800_03270) radC 339998..340474 (+) 477 WP_001186787.1 RadC family protein Machinery gene
  DL800_RS03275 (DL800_03275) - 340543..340764 (+) 222 WP_000692308.1 DUF987 domain-containing protein -
  DL800_RS03280 (DL800_03280) - 340844..341138 (+) 295 Protein_314 type IV toxin-antitoxin system YeeU family antitoxin -
  DL800_RS03285 (DL800_03285) - 341341..341644 (+) 304 Protein_315 TA system toxin CbtA family protein -
  DL800_RS03295 (DL800_03295) - 343361..344431 (+) 1071 WP_000942525.1 DNA cytosine methyltransferase -
  DL800_RS03300 (DL800_03300) - 344410..345069 (-) 660 WP_001444700.1 HNH endonuclease signature motif containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17806.47 Da        Isoelectric Point: 7.6152

>NTDB_id=256961 DL800_RS03270 WP_001186787.1 339998..340474(+) (radC) [Escherichia coli strain SD134209]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRTAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=256961 DL800_RS03270 WP_001186787.1 339998..340474(+) (radC) [Escherichia coli strain SD134209]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTACGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.846

74.051

0.399