Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CVO91_RS11745 Genome accession   NZ_CP024974
Coordinates   2323502..2324869 (-) Length   455 a.a.
NCBI ID   WP_002939963.1    Uniprot ID   A0AA87FAH0
Organism   Streptococcus suis strain CZ130302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2318502..2329869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS11720 (CVO91_11720) - 2318740..2319861 (+) 1122 WP_029178298.1 IS110 family transposase -
  CVO91_RS11725 (CVO91_11725) - 2320519..2321277 (-) 759 WP_002939965.1 TIGR00266 family protein -
  CVO91_RS11730 (CVO91_11730) - 2321549..2322043 (-) 495 WP_002939964.1 carbonic anhydrase -
  CVO91_RS11735 (CVO91_11735) - 2322429..2322761 (-) 333 Protein_2217 magnesium chelatase domain-containing protein -
  CVO91_RS11740 (CVO91_11740) - 2322763..2323116 (-) 354 Protein_2218 carbonic anhydrase -
  CVO91_RS11745 (CVO91_11745) radA 2323502..2324869 (-) 1368 WP_002939963.1 DNA repair protein RadA Machinery gene
  CVO91_RS11750 (CVO91_11750) - 2324876..2325409 (-) 534 WP_100664940.1 histidine phosphatase family protein -
  CVO91_RS11755 (CVO91_11755) - 2325416..2325859 (-) 444 WP_100664941.1 dUTP diphosphatase -
  CVO91_RS11760 (CVO91_11760) - 2325878..2326864 (-) 987 WP_044776908.1 virulence RhuM family protein -
  CVO91_RS11765 (CVO91_11765) - 2327204..2328070 (-) 867 WP_100664942.1 helix-turn-helix transcriptional regulator -
  CVO91_RS11770 (CVO91_11770) - 2328405..2328689 (+) 285 WP_029177760.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49859.37 Da        Isoelectric Point: 6.5158

>NTDB_id=256948 CVO91_RS11745 WP_002939963.1 2323502..2324869(-) (radA) [Streptococcus suis strain CZ130302]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=256948 CVO91_RS11745 WP_002939963.1 2323502..2324869(-) (radA) [Streptococcus suis strain CZ130302]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGTGGAGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAATTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCTATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
ATCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAATATTGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTGGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGATCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGTCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTAGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTACCCAAGGAAATCACTGTTGTCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTGT
TTAAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment