Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   CVO91_RS09970 Genome accession   NZ_CP024974
Coordinates   1951291..1953066 (-) Length   591 a.a.
NCBI ID   WP_033875536.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946291..1958066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS09945 (CVO91_09945) - 1946666..1948465 (+) 1800 WP_002942786.1 acyltransferase family protein -
  CVO91_RS09950 (CVO91_09950) - 1948673..1949326 (-) 654 WP_002942785.1 phosphatase PAP2 family protein -
  CVO91_RS09955 (CVO91_09955) - 1949351..1949908 (-) 558 WP_002942784.1 ECF transporter S component -
  CVO91_RS09960 (CVO91_09960) - 1950358..1950903 (-) 546 WP_002942783.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVO91_RS09970 (CVO91_09970) oppA 1951291..1953066 (-) 1776 WP_033875536.1 oligopeptide ABC transporter substrate-binding protein Regulator
  CVO91_RS09975 (CVO91_09975) yidD 1953487..1953726 (-) 240 WP_002942777.1 membrane protein insertion efficiency factor YidD -
  CVO91_RS09980 (CVO91_09980) - 1953723..1954457 (-) 735 WP_002942771.1 pseudouridine synthase -
  CVO91_RS09985 (CVO91_09985) scpB 1954447..1955016 (-) 570 WP_002942769.1 SMC-Scp complex subunit ScpB -
  CVO91_RS09990 (CVO91_09990) - 1955000..1955719 (-) 720 WP_002942755.1 segregation/condensation protein A -
  CVO91_RS09995 (CVO91_09995) xerD 1955719..1956450 (-) 732 WP_002942754.1 site-specific tyrosine recombinase XerD -
  CVO91_RS10000 (CVO91_10000) cbpB 1956447..1956905 (-) 459 WP_002942752.1 cyclic-di-AMP-binding protein CbpB -
  CVO91_RS10005 (CVO91_10005) - 1956902..1957429 (-) 528 WP_002942749.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65350.11 Da        Isoelectric Point: 4.3107

>NTDB_id=256940 CVO91_RS09970 WP_033875536.1 1951291..1953066(-) (oppA) [Streptococcus suis strain CZ130302]
MKRMKNIALTGIGLLSIATLTACQTKEKTSNVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMKAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=256940 CVO91_RS09970 WP_033875536.1 1951291..1953066(-) (oppA) [Streptococcus suis strain CZ130302]
ATGAAAAGAATGAAAAACATCGCTTTGACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGCCAAACTAAAGA
AAAGACGAGCAATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGGACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATTGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGATTATACGGTTGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAAAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAATGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGCTATAATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCGCTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.993

100

0.663

Multiple sequence alignment