Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   CVO91_RS04270 Genome accession   NZ_CP024974
Coordinates   811532..812371 (+) Length   279 a.a.
NCBI ID   WP_002939790.1    Uniprot ID   A0AA87F9W4
Organism   Streptococcus suis strain CZ130302     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 806532..817371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS04240 (CVO91_04240) - 806997..807875 (+) 879 WP_002939795.1 F0F1 ATP synthase subunit gamma -
  CVO91_RS04245 (CVO91_04245) atpD 807895..809301 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  CVO91_RS04250 (CVO91_04250) - 809311..809727 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  CVO91_RS04255 (CVO91_04255) - 809787..810011 (+) 225 WP_024387485.1 DUF1146 family protein -
  CVO91_RS04260 (CVO91_04260) murA 810035..811318 (+) 1284 WP_002939791.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CVO91_RS04265 (CVO91_04265) - 811311..811502 (+) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  CVO91_RS04270 (CVO91_04270) endA 811532..812371 (+) 840 WP_002939790.1 DNA/RNA non-specific endonuclease Machinery gene
  CVO91_RS04275 (CVO91_04275) - 812558..814111 (+) 1554 WP_002939789.1 MFS transporter -
  CVO91_RS04280 (CVO91_04280) - 814167..815195 (+) 1029 WP_002939788.1 sugar kinase -
  CVO91_RS04285 (CVO91_04285) uidA 815211..817010 (+) 1800 WP_002939784.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30200.36 Da        Isoelectric Point: 6.7644

>NTDB_id=256929 CVO91_RS04270 WP_002939790.1 811532..812371(+) (endA) [Streptococcus suis strain CZ130302]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVANYSYYVNQSKASESTPSQELASSVLTEDVKKQLGHSIDWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPAGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQSNSDDSTGQNYYETRIRKALDNNKRVRYRVTLIYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=256929 CVO91_RS04270 WP_002939790.1 811532..812371(+) (endA) [Streptococcus suis strain CZ130302]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTAATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAGGATGTTAAGAAACAGCTTGGACATTCAATTGACTGGAATGGAGCG
GGTGCTTTTATCATCAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGAGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACCCCAGCTGGTTGGCATCAGGTACAGGATTTGGATGGTTCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGTCTAATAGTGATGATTCAACCGGTCAGAATTACTACGAAACTAGGATTC
GAAAGGCTTTGGATAACAATAAAAGAGTTCGTTACCGTGTGACCTTGATTTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTACGGTGAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72.458

84.588

0.613
  endA Streptococcus pneumoniae D39

72.458

84.588

0.613
  endA Streptococcus pneumoniae R6

72.458

84.588

0.613
  endA Streptococcus pneumoniae TIGR4

72.458

84.588

0.613

Multiple sequence alignment