Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CVO91_RS01465 Genome accession   NZ_CP024974
Coordinates   258578..259291 (+) Length   237 a.a.
NCBI ID   WP_002941027.1    Uniprot ID   A0AA87F8L8
Organism   Streptococcus suis strain CZ130302     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 253578..264291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS01455 (CVO91_01455) treC 254645..256270 (-) 1626 WP_100664726.1 alpha,alpha-phosphotrehalase -
  CVO91_RS01460 (CVO91_01460) treP 256351..258345 (-) 1995 WP_002941026.1 PTS system trehalose-specific EIIBC component -
  CVO91_RS01465 (CVO91_01465) treR 258578..259291 (+) 714 WP_002941027.1 trehalose operon repressor Regulator
  CVO91_RS01470 (CVO91_01470) - 259349..259660 (+) 312 WP_002941028.1 hypothetical protein -
  CVO91_RS01475 (CVO91_01475) - 259657..260205 (+) 549 WP_002935945.1 CvpA family protein -
  CVO91_RS01480 (CVO91_01480) - 260367..262700 (+) 2334 WP_002941030.1 endonuclease MutS2 -
  CVO91_RS01485 (CVO91_01485) - 262724..263436 (+) 713 Protein_247 GNAT family N-acetyltransferase -
  CVO91_RS01490 (CVO91_01490) - 263540..263917 (+) 378 WP_029744620.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27242.10 Da        Isoelectric Point: 6.2788

>NTDB_id=256916 CVO91_RS01465 WP_002941027.1 258578..259291(+) (treR) [Streptococcus suis strain CZ130302]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENQLVLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=256916 CVO91_RS01465 WP_002941027.1 258578..259291(+) (treR) [Streptococcus suis strain CZ130302]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAGAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGTAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAACCAGCTAGTCCTAGATATTGCTTATGCACAAAAGGAAATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.564

98.734

0.519

Multiple sequence alignment