Detailed information NTG0025689

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BXE_RS01605
• Genome accession: NC_007951
• Coordinates: 357484..358641 (-)
• Length: 385 a.a.
• NCBI ID: WP_011486693.1
• Uniprot ID: Q145X9
• Organism: Paraburkholderia xenovorans LB400
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 352484..363641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BXE_RS01580 (Bxe_A4145)	-	353591..354154 (+)	564	WP_011486688.1	acyloxyacyl hydrolase	-
BXE_RS01585 (Bxe_A4144)	-	354198..354581 (+)	384	WP_011486689.1	nuclear transport factor 2 family protein	-
BXE_RS01590 (Bxe_A4143)	ybiB	354822..355793 (-)	972	WP_011486690.1	DNA-binding protein YbiB	-
BXE_RS01595 (Bxe_A4142)	-	356022..356720 (+)	699	WP_011486691.1	fumarylacetoacetate hydrolase family protein	-
BXE_RS01600 (Bxe_A4141)	maiA	356750..357394 (+)	645	WP_011486692.1	maleylacetoacetate isomerase	-
BXE_RS01605 (Bxe_A4140)	pilA	357484..358641 (-)	1158	WP_011486693.1	signal recognition particle-docking protein FtsY	Machinery gene
BXE_RS01615 (Bxe_A4139)	rsmD	358883..359497 (+)	615	WP_011486694.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BXE_RS01620 (Bxe_A4138)	coaD	359609..360124 (+)	516	WP_007179424.1	pantetheine-phosphate adenylyltransferase	-
BXE_RS01625 (Bxe_A4137)	-	360188..360445 (+)	258	WP_011486695.1	YfhL family 4Fe-4S dicluster ferredoxin	-
BXE_RS01630 (Bxe_A4136)	hisC	360527..361606 (-)	1080	WP_011486696.1	histidinol-phosphate transaminase	-
BXE_RS01635 (Bxe_A4135)	pth	361676..362278 (-)	603	WP_011486697.1	aminoacyl-tRNA hydrolase	-
BXE_RS01640 (Bxe_A4134)	-	362427..363050 (-)	624	WP_011486698.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 40727.70 Da
• Isoelectric Point: 5.0693

>NTDB_id=25689 BXE_RS01605 WP_011486693.1 357484..358641(-) (pilA) [Paraburkholderia xenovorans LB400]
MFSFFKRFKGSKESDNAPEESQSAPEGSTPEAAVQAPAPVAPVAPRPAAAPARVETAAAPAIGPEPEESAPGTVEIVPPP
LPDAGAKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEYLLEALREKVRTERLTDPQQVKA
ALRTLLVDLLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNV
TVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGS

Nucleotide

• Length: 1158 bp

>NTDB_id=25689 BXE_RS01605 WP_011486693.1 357484..358641(-) (pilA) [Paraburkholderia xenovorans LB400]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCCGAAGAGTCGCAAAGCGCGCCAGAAGG
CTCGACGCCCGAAGCCGCCGTGCAGGCACCCGCGCCTGTCGCGCCGGTCGCACCGCGCCCGGCGGCGGCCCCGGCTCGCG
TCGAGACAGCCGCGGCGCCCGCAATCGGGCCCGAGCCGGAAGAATCCGCGCCCGGGACCGTCGAAATCGTTCCGCCGCCG
CTGCCGGACGCGGGCGCGAAGCGCTCGTGGCTGACACGCCTGAAAACCGGCTTGTCGAAGACGAGTTCGAGCCTGACTGG
CATCTTTGTCGGCACGAAGATCGACGAAGATCTGTACGAAGAGCTCGAAACCGCACTGCTCATGTCGGACGCAGGGGTGG
ACGCCACCGAATACCTGCTCGAAGCGCTGCGCGAAAAAGTGCGCACCGAGCGCCTCACCGATCCTCAGCAGGTCAAGGCA
GCGTTGCGCACGCTGCTGGTCGATCTGCTCAAGCCGCTGGAAAAATCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGAT
GATGATCGCGGGTGTCAACGGCGCGGGCAAAACCACCAGTATCGGCAAGCTCGCCAAGCATCTGCAAAGCTTCGATCAGT
CGGTGCTGCTGGCAGCGGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTGGCCATCTGGGGCCAGCGCAACAACGTG
ACGGTGGTGTCGCAGGAAAGCGGCGACCCGGCGGCGGTGATCTTCGACGCGGTCGGTGCCGCGCGTGCCCGCAAGATCGA
CGTGATGATGGCGGACACGGCCGGCCGCCTGCCGACCCAACTGCATCTCATGGAAGAACTGCGCAAGGTGAAGCGCGTGA
TCGGCAAGGCACAGGAAGGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTCGCGCAA
GTGAAGGCTTTCGACGACGCGCTCGGCCTCACCGGCCTGATCGTCACCAAGCTCGACGGCACGGCGAAGGGCGGCATTCT
GGCCGCGATCGCGCGGCAGCGTCCGATCCCGGTGTATTTCATCGGCGTCGGCGAAAAGGTCGAGGACTTGCAGCCGTTCA
GCGCGGAAGAGTTTTCCGACGCATTGCTGGGCAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (185-383)

• SRP54-type protein, helical bundle domain (SRP54_N) (103-163)

3D structure

• AlphaFold DB: Q145X9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	55.959	100	0.561