Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CV760_RS00510 Genome accession   NZ_CP024959
Coordinates   129023..130864 (+) Length   613 a.a.
NCBI ID   WP_124917029.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain P2P3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 124023..135864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV760_RS00485 (CV760_00485) thiF 124081..124794 (-) 714 WP_124917027.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  CV760_RS00490 (CV760_00490) thiS 124860..125054 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  CV760_RS00495 (CV760_00495) - 125491..126459 (+) 969 WP_124917028.1 aldo/keto reductase -
  CV760_RS00500 (CV760_00500) - 126642..127133 (+) 492 WP_117838161.1 MarR family transcriptional regulator -
  CV760_RS00505 (CV760_00505) rcrP 127260..129011 (+) 1752 WP_117838163.1 ABC transporter ATP-binding protein Regulator
  CV760_RS00510 (CV760_00510) rcrQ 129023..130864 (+) 1842 WP_124917029.1 ABC transporter ATP-binding protein Regulator
  CV760_RS00515 (CV760_00515) - 131035..132015 (+) 981 WP_124917030.1 aldo/keto reductase -
  CV760_RS00520 (CV760_00520) - 132029..133081 (-) 1053 WP_033499580.1 FAD:protein FMN transferase -
  CV760_RS00525 (CV760_00525) - 133925..135610 (+) 1686 WP_236837525.1 FTR1 family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67407.14 Da        Isoelectric Point: 6.5885

>NTDB_id=256842 CV760_RS00510 WP_124917029.1 129023..130864(+) (rcrQ) [Bifidobacterium adolescentis strain P2P3]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMIFALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSVTLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNNDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGVDGKPQPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=256842 CV760_RS00510 WP_124917029.1 129023..130864(+) (rcrQ) [Bifidobacterium adolescentis strain P2P3]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTTTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTACGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTCATCACATCGGTCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGTCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAACGACCTGTACGTGTCCGGCTGGAAAAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTTGTCGGCAACTTCGGATACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAGCC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTGGGCGTCGGTGTGGACGGCAAGCCGCAGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACGATGGTGAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATTGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGATAA
GGCGTCGCTTTCCCAGGGCCAGCGCCAGCTGCTGACGATCGCCCGCGCGATGGTGGAGGACGCGCCGATCCTGATTCTTG
ACGAAGCCACCTCCTCGGTCGATACACGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(36-320)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.315

96.411

0.524

Multiple sequence alignment