Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CV760_RS00505 Genome accession   NZ_CP024959
Coordinates   127260..129011 (+) Length   583 a.a.
NCBI ID   WP_117838163.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain P2P3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 122260..134011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV760_RS00480 (CV760_00480) - 123010..123924 (-) 915 WP_081026611.1 thiazole synthase -
  CV760_RS00485 (CV760_00485) thiF 124081..124794 (-) 714 WP_124917027.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  CV760_RS00490 (CV760_00490) thiS 124860..125054 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  CV760_RS00495 (CV760_00495) - 125491..126459 (+) 969 WP_124917028.1 aldo/keto reductase -
  CV760_RS00500 (CV760_00500) - 126642..127133 (+) 492 WP_117838161.1 MarR family transcriptional regulator -
  CV760_RS00505 (CV760_00505) rcrP 127260..129011 (+) 1752 WP_117838163.1 ABC transporter ATP-binding protein Regulator
  CV760_RS00510 (CV760_00510) rcrQ 129023..130864 (+) 1842 WP_124917029.1 ABC transporter ATP-binding protein Regulator
  CV760_RS00515 (CV760_00515) - 131035..132015 (+) 981 WP_124917030.1 aldo/keto reductase -
  CV760_RS00520 (CV760_00520) - 132029..133081 (-) 1053 WP_033499580.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64420.52 Da        Isoelectric Point: 5.8511

>NTDB_id=256841 CV760_RS00505 WP_117838163.1 127260..129011(+) (rcrP) [Bifidobacterium adolescentis strain P2P3]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMHDIWVTGGKMLLVSLGSAACAVVTGYIAA
RVGASFSQRLRSLEFKKVESFGPAEMSRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLAVIAVIMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEGYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=256841 CV760_RS00505 WP_117838163.1 127260..129011(+) (rcrP) [Bifidobacterium adolescentis strain P2P3]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGATTATATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCACGACA
TCTGGGTGACCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCCGCGGCGTGCGCTGTCGTCACCGGCTACATCGCCGCA
CGCGTGGGTGCCTCGTTCAGCCAGCGCCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGCCCGGCCGAAATGAG
CCGATTCTCCACCGCATCGCTGATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGCGGTCATCGCCGTGATCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTGGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTCCGCGCCTACAACGCCGAGG
GCTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGCGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTCGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAATCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.749

100

0.509

Multiple sequence alignment