Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CSC58_RS01650 Genome accession   NZ_CP029681
Coordinates   301816..302532 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   P0A0I7
Organism   Staphylococcus aureus strain AR_0473     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 296816..307532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC58_RS01630 (CSC58_0304) - 297908..298858 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  CSC58_RS01635 (CSC58_0305) - 299007..300491 (+) 1485 WP_000141430.1 sucrose-6-phosphate hydrolase -
  CSC58_RS01640 (CSC58_0306) - 300488..301447 (+) 960 WP_001253305.1 carbohydrate kinase -
  CSC58_RS01645 - 301635..301744 (-) 110 Protein_305 hypothetical protein -
  CSC58_RS01650 (CSC58_0307) agrA 301816..302532 (-) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  CSC58_RS01655 - 302551..303843 (-) 1293 WP_001789596.1 GHKL domain-containing protein -
  CSC58_RS01660 (CSC58_0309) - 303868..304008 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  CSC58_RS01665 (CSC58_0310) agrB 304005..304574 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  CSC58_RS14885 hld 304864..304944 (+) 81 WP_000046022.1 delta-hemolysin -
  CSC58_RS01675 (CSC58_0312) - 305544..306329 (-) 786 WP_000867942.1 carbon-nitrogen family hydrolase -
  CSC58_RS01680 (CSC58_0313) - 306690..307316 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=256783 CSC58_RS01650 WP_000688492.1 301816..302532(-) (agrA) [Staphylococcus aureus strain AR_0473]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=256783 CSC58_RS01650 WP_000688492.1 301816..302532(-) (agrA) [Staphylococcus aureus strain AR_0473]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BS1
  PDB 4G4K

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1