Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   BPRO_RS05610 Genome accession   NC_007948
Coordinates   1174111..1174509 (+) Length   132 a.a.
NCBI ID   WP_011482090.1    Uniprot ID   Q12EF4
Organism   Polaromonas sp. JS666     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169111..1179509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPRO_RS05590 (Bpro_1131) - 1169446..1169682 (+) 237 WP_011482085.1 Fis family transcriptional regulator -
  BPRO_RS05595 (Bpro_1132) purH 1169744..1171327 (+) 1584 WP_011482086.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  BPRO_RS05600 (Bpro_1133) hemL 1171497..1172825 (-) 1329 WP_011482087.1 glutamate-1-semialdehyde 2,1-aminomutase -
  BPRO_RS05605 (Bpro_1134) - 1172806..1173771 (-) 966 WP_049764071.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BPRO_RS28430 (Bpro_1135) - 1173854..1174027 (+) 174 WP_011482089.1 rubredoxin -
  BPRO_RS05610 (Bpro_1136) pilG 1174111..1174509 (+) 399 WP_011482090.1 response regulator Regulator
  BPRO_RS05615 (Bpro_1137) - 1174509..1174874 (+) 366 WP_007864987.1 response regulator transcription factor -
  BPRO_RS05620 (Bpro_1138) - 1174897..1175427 (+) 531 WP_011482091.1 chemotaxis protein CheW -
  BPRO_RS05625 (Bpro_1139) - 1175456..1177750 (+) 2295 WP_041388431.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14537.77 Da        Isoelectric Point: 5.8681

>NTDB_id=25677 BPRO_RS05610 WP_011482090.1 1174111..1174509(+) (pilG) [Polaromonas sp. JS666]
MSIPNSGLKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDYEPDLIFCDILMPRLDGYQTCAIIKRNAKFS
GVPIVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQTVQELGSAKQGVV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=25677 BPRO_RS05610 WP_011482090.1 1174111..1174509(+) (pilG) [Polaromonas sp. JS666]
GTGAGCATTCCCAATTCCGGATTGAAGGTCCTGGTCATCGATGACAGCAATACGATCCGGCGCAGCGCCGAAATTTTCCT
CAAGCAGGGAGGCCATGAAGTATTGCTGGCTGAAGATGGCTTTGACGCCCTCTCCAAGGTCAACGACTACGAGCCCGACC
TGATTTTTTGCGACATTTTGATGCCTCGCCTGGATGGCTATCAGACCTGTGCGATTATCAAGCGCAACGCAAAGTTCTCG
GGTGTGCCCATTGTGATGCTGTCCTCCAAGGATGGGGTGTTCGACAAGGCGCGGGGTCGCATGGTGGGTTCACAGGACTA
CCTGACCAAGCCTTTTACCAAAGATCAGCTGCTGCAGACCGTTCAGGAACTCGGCAGTGCAAAACAAGGAGTAGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q12EF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60.345

87.879

0.53

Multiple sequence alignment