Detailed information NTG0256676

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: CV723_RS02620
• Genome accession: NZ_CP024953
• Coordinates: 519083..520291 (-)
• Length: 402 a.a.
• NCBI ID: WP_000814183.1
• Uniprot ID: D7FD44
• Organism: Helicobacter pylori strain 7.13
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 514083..525291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV723_RS02595 (CV723_02600)	-	514128..514646 (-)	519	WP_000760576.1	hypothetical protein	-
CV723_RS02600 (CV723_02605)	-	514643..515587 (-)	945	WP_000362464.1	CpaF/VirB11 family protein	-
CV723_RS02605 (CV723_02610)	-	515592..515867 (-)	276	WP_001278752.1	hypothetical protein	-
CV723_RS02610 (CV723_02615)	-	515884..516846 (-)	963	WP_001095495.1	hypothetical protein	-
CV723_RS02615 (CV723_02620)	-	516859..519099 (-)	2241	WP_000730437.1	collagen-like protein	-
CV723_RS02620 (CV723_02625)	comB10	519083..520291 (-)	1209	WP_000814183.1	DNA type IV secretion system protein ComB10	Machinery gene
CV723_RS02625 (CV723_02630)	-	520288..521943 (-)	1656	WP_000617227.1	TrbG/VirB9 family P-type conjugative transfer protein	-
CV723_RS02630 (CV723_02635)	-	521940..523076 (-)	1137	WP_000067692.1	VirB8/TrbF family protein	-
CV723_RS08400 (CV723_02640)	-	523069..523209 (-)	141	WP_000789929.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44988.57 Da
• Isoelectric Point: 10.0507

>NTDB_id=256676 CV723_RS02620 WP_000814183.1 519083..520291(-) (comB10) [Helicobacter pylori strain 7.13]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPDTEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEILAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=256676 CV723_RS02620 WP_000814183.1 519083..520291(-) (comB10) [Helicobacter pylori strain 7.13]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGATACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
TTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGATTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.43	97.264	0.51