Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CV724_RS00265 | Genome accession | NZ_CP024952 |
| Coordinates | 59495..60070 (+) | Length | 191 a.a. |
| NCBI ID | WP_145726598.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B125A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 54495..65070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV724_RS00240 (CV724_00240) | uvrD | 55186..57231 (+) | 2046 | WP_194151208.1 | DNA helicase UvrD | - |
| CV724_RS00245 (CV724_00245) | flgA | 57228..57884 (+) | 657 | WP_145726595.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CV724_RS00250 (CV724_00250) | - | 57894..58457 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| CV724_RS00255 (CV724_00255) | coaD | 58457..58930 (+) | 474 | WP_024118156.1 | pantetheine-phosphate adenylyltransferase | - |
| CV724_RS00260 (CV724_00260) | tmk | 58932..59507 (+) | 576 | WP_145726596.1 | dTMP kinase | - |
| CV724_RS00265 (CV724_00265) | comFC | 59495..60070 (+) | 576 | WP_145726598.1 | ComF family protein | Machinery gene |
| CV724_RS00270 (CV724_00270) | - | 60103..62142 (+) | 2040 | WP_145726599.1 | N-6 DNA methylase | - |
| CV724_RS00275 (CV724_00275) | - | 62139..63415 (+) | 1277 | Protein_53 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21418.01 Da Isoelectric Point: 9.0945
>NTDB_id=256654 CV724_RS00265 WP_145726598.1 59495..60070(+) (comFC) [Helicobacter pylori strain B125A]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLIAHRAGKEFVKILQEKG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLIAHRAGKEFVKILQEKG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=256654 CV724_RS00265 WP_145726598.1 59495..60070(+) (comFC) [Helicobacter pylori strain B125A]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGATTGCTCATAGGGCGGGCAAAGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCATATGCGGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATAAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGATTGCTCATAGGGCGGGCAAAGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATATCCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCATATGCGGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATAAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |