Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   CV724_RS00010 Genome accession   NZ_CP024952
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_145726540.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS00005 (CV724_00005) dnaA 1..1368 (+) 1368 WP_145726539.1 chromosomal replication initiator protein DnaA -
  CV724_RS00010 (CV724_00010) comH 1597..3036 (+) 1440 WP_145726540.1 competence protein Machinery gene
  CV724_RS00020 (CV724_00020) - 3216..3968 (+) 753 WP_145726542.1 exodeoxyribonuclease III -
  CV724_RS00025 (CV724_00025) - 3965..4600 (-) 636 WP_000668036.1 outer membrane protein -
  CV724_RS00030 (CV724_00030) - 4604..4951 (-) 348 WP_145726543.1 hypothetical protein -
  CV724_RS00035 (CV724_00035) recG 5033..6904 (+) 1872 WP_145726545.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54795.70 Da        Isoelectric Point: 6.4418

>NTDB_id=256653 CV724_RS00010 WP_145726540.1 1597..3036(+) (comH) [Helicobacter pylori strain B125A]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHPHQMPSLNAPMQKPQNKPSSSQQPSQNFSYPEPKLGSKNSKNSLLQPL
AIPSKISPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNDTSNADISENNESNENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKHVDEDKQTATDITPCDYSTAENKSGKIITPYTKISIHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=256653 CV724_RS00010 WP_145726540.1 1597..3036(+) (comH) [Helicobacter pylori strain B125A]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCCTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACCCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAATAAACCTAGCTCATCGC
AACAACCTTCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACCAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACACCACCCACCGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
GTGAAAATAATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATATTAAAGAATTTGCG
TGCGGAAAATGGGTTTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACACGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTATTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.704

100

0.977

Multiple sequence alignment