Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CV725_RS02430 Genome accession   NZ_CP024951
Coordinates   479649..480962 (+) Length   437 a.a.
NCBI ID   WP_000653577.1    Uniprot ID   -
Organism   Helicobacter pylori B128     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474649..485962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV725_RS02410 (CV725_02405) crdR 474963..475604 (+) 642 WP_001169788.1 copper response regulator transcription factor CrdR -
  CV725_RS02415 (CV725_02410) crdS 475570..476772 (+) 1203 WP_080006218.1 copper-sensing histidine kinase CrdS -
  CV725_RS02420 (CV725_02415) - 476775..478175 (+) 1401 WP_000954011.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  CV725_RS02425 (CV725_02420) - 478186..479652 (+) 1467 WP_000349737.1 replicative DNA helicase -
  CV725_RS02430 (CV725_02425) comEC/comE3 479649..480962 (+) 1314 WP_000653577.1 ComEC/Rec2 family competence protein Machinery gene
  CV725_RS02435 (CV725_02430) mqnP 481033..481875 (+) 843 WP_231844699.1 menaquinone biosynthesis prenyltransferase MqnP -
  CV725_RS02440 (CV725_02435) - 481868..482362 (+) 495 WP_001861728.1 hypothetical protein -
  CV725_RS02445 (CV725_02440) - 482375..482881 (+) 507 WP_000953109.1 hypothetical protein -
  CV725_RS02450 (CV725_02445) - 482875..483678 (+) 804 WP_000226177.1 phosphatidylserine decarboxylase -
  CV725_RS02455 (CV725_02450) nadA 483668..484678 (+) 1011 WP_001141826.1 quinolinate synthase NadA -
  CV725_RS02460 (CV725_02455) nadC 484678..485499 (+) 822 WP_000404087.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50111.94 Da        Isoelectric Point: 9.8368

>NTDB_id=256634 CV725_RS02430 WP_000653577.1 479649..480962(+) (comEC/comE3) [Helicobacter pylori B128]
MKDKTFQGAFELLSTPKEYLLCGVFLSLLLTLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSYWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTISIPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=256634 CV725_RS02430 WP_000653577.1 479649..480962(+) (comEC/comE3) [Helicobacter pylori B128]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTGCTGTGTGGGGTGTTTTTAAG
CCTTTTGTTAACACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAAGATTTTAAATCGTATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCCTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTGGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTACTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTAAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATG
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment