Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   CV726_RS00010 Genome accession   NZ_CP024950
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_145939803.1    Uniprot ID   -
Organism   Helicobacter pylori strain B130A     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV726_RS00005 (CV726_00005) dnaA 1..1368 (+) 1368 WP_145776630.1 chromosomal replication initiator protein DnaA -
  CV726_RS00010 (CV726_00010) comH 1597..3036 (+) 1440 WP_145939803.1 competence protein Machinery gene
  CV726_RS00020 (CV726_00020) - 3217..3969 (+) 753 WP_000767586.1 exodeoxyribonuclease III -
  CV726_RS00025 (CV726_00025) - 3966..4592 (-) 627 WP_145939804.1 outer membrane protein -
  CV726_RS00030 (CV726_00030) - 4601..4954 (-) 354 WP_000837019.1 hypothetical protein -
  CV726_RS00035 (CV726_00035) recG 5036..6907 (+) 1872 WP_145939805.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54791.63 Da        Isoelectric Point: 6.5117

>NTDB_id=256612 CV726_RS00010 WP_145939803.1 1597..3036(+) (comH) [Helicobacter pylori strain B130A]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKVSPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSDADINENNESNENRDNVEKQAVRDANIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=256612 CV726_RS00010 WP_145939803.1 1597..3036(+) (comH) [Helicobacter pylori strain B130A]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACGCACACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAATCCCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAGTAAGCCCCACTAACGAAACTCAAACGCCAACAAATGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCTCTGACGCTGATATTA
ATGAAAACAATGAAAGCAACGAAAATAGAGACAATGTGGAAAAACAAGCCGTTAGAGATGCTAATATTAAAGAATTTGCA
TGCGGGAAGTGGGTTTATGACGATGAAAACTTGCAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAATAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCTAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTTTATGAGCGCCCCAAACAAGACGATC
AAGTAGAGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAGAGCAGCGA
ATACAAAGAATGGGTTAAAAATCATGTGCGCTTTAAAGAAGGAGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.077

100

0.971

Multiple sequence alignment