Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CV727_RS08115 Genome accession   NZ_CP024949
Coordinates   1637137..1638450 (-) Length   437 a.a.
NCBI ID   WP_194151521.1    Uniprot ID   -
Organism   Helicobacter pylori strain B136A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632137..1643450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV727_RS08080 (CV727_08075) - 1632255..1632530 (+) 276 Protein_1524 restriction endonuclease subunit S -
  CV727_RS08085 (CV727_08080) nadC 1632600..1633421 (-) 822 WP_145821441.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CV727_RS08090 (CV727_08085) nadA 1633421..1634431 (-) 1011 WP_145821443.1 quinolinate synthase NadA -
  CV727_RS08095 (CV727_08090) - 1634418..1635224 (-) 807 WP_145821445.1 phosphatidylserine decarboxylase -
  CV727_RS08100 (CV727_08095) - 1635218..1635724 (-) 507 WP_000953105.1 hypothetical protein -
  CV727_RS08105 (CV727_08100) - 1635737..1636231 (-) 495 WP_194151520.1 hypothetical protein -
  CV727_RS08110 (CV727_08105) mqnP 1636224..1637066 (-) 843 WP_265473442.1 menaquinone biosynthesis prenyltransferase MqnP -
  CV727_RS08115 (CV727_08110) comEC/comE3 1637137..1638450 (-) 1314 WP_194151521.1 ComEC/Rec2 family competence protein Machinery gene
  CV727_RS08120 (CV727_08115) - 1638447..1639913 (-) 1467 WP_108520429.1 replicative DNA helicase -
  CV727_RS08125 (CV727_08120) - 1639924..1641318 (-) 1395 WP_145821451.1 NAD(P)H-hydrate dehydratase -
  CV727_RS08130 (CV727_08125) crdS 1641321..1642523 (-) 1203 WP_145821453.1 copper-sensing histidine kinase CrdS -
  CV727_RS08135 (CV727_08130) crdR 1642489..1643130 (-) 642 WP_121046722.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50233.27 Da        Isoelectric Point: 9.8724

>NTDB_id=256610 CV727_RS08115 WP_194151521.1 1637137..1638450(-) (comEC/comE3) [Helicobacter pylori strain B136A]
MKDKTFQGAFELLTTPKEYLWCGVILSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSLQAISLS
VLIFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILSMPLTIPTISIPSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=256610 CV727_RS08115 WP_194151521.1 1637137..1638450(-) (comEC/comE3) [Helicobacter pylori strain B136A]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTCTTCAAGCCATAAGCTTAAGC
GTGCTAATTTTTTTGAACATGCTCATTATCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTGAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961

Multiple sequence alignment