Detailed information NTG0256593

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: CV727_RS03935
• Genome accession: NZ_CP024949
• Coordinates: 820581..821789 (-)
• Length: 402 a.a.
• NCBI ID: WP_145820476.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B136A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 815581..826789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV727_RS03910 (CV727_03910)	-	815644..816162 (-)	519	WP_000760576.1	hypothetical protein	-
CV727_RS03915 (CV727_03915)	-	816159..817103 (-)	945	WP_145820471.1	ATPase, T2SS/T4P/T4SS family	-
CV727_RS03920 (CV727_03920)	-	817108..817383 (-)	276	WP_001278752.1	hypothetical protein	-
CV727_RS03925 (CV727_03925)	-	817400..818362 (-)	963	WP_145820473.1	hypothetical protein	-
CV727_RS03930 (CV727_03930)	-	818375..820597 (-)	2223	WP_145820475.1	collagen-like protein	-
CV727_RS03935 (CV727_03935)	comB10	820581..821789 (-)	1209	WP_145820476.1	DNA type IV secretion system protein ComB10	Machinery gene
CV727_RS03940 (CV727_03940)	-	821786..823441 (-)	1656	WP_145820479.1	TrbG/VirB9 family P-type conjugative transfer protein	-
CV727_RS03945 (CV727_03945)	-	823438..824574 (-)	1137	WP_145820481.1	VirB8/TrbF family protein	-
CV727_RS08520 (CV727_03950)	-	824567..824707 (-)	141	WP_145820483.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 45005.65 Da
• Isoelectric Point: 10.1502

>NTDB_id=256593 CV727_RS03935 WP_145820476.1 820581..821789(-) (comB10) [Helicobacter pylori strain B136A]
MKQSLLKKIGLGVGGFVVLMALGLLVNKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEESKEKAKETPKVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=256593 CV727_RS03935 WP_145820476.1 820581..821789(-) (comB10) [Helicobacter pylori strain B136A]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGTTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGTCAAAAGAAAAAGCCAAAGAAACACCAAAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAACCTTAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGTAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.685	97.264	0.512