Detailed information
Bioinformatically predicted
Overview
| Name | comH | Type | Machinery gene |
| Locus tag | CV727_RS00010 | Genome accession | NZ_CP024949 |
| Coordinates | 1597..3036 (+) | Length | 479 a.a. |
| NCBI ID | WP_145819654.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B136A | ||
| Function | import of DNA into the periplasm (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..8036
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV727_RS00005 (CV727_00005) | dnaA | 1..1368 (+) | 1368 | WP_145819652.1 | chromosomal replication initiator protein DnaA | - |
| CV727_RS00010 (CV727_00010) | comH | 1597..3036 (+) | 1440 | WP_145819654.1 | competence protein | Machinery gene |
| CV727_RS00020 (CV727_00020) | - | 3216..3968 (+) | 753 | WP_145819656.1 | exodeoxyribonuclease III | - |
| CV727_RS00025 (CV727_00025) | - | 3965..4600 (-) | 636 | WP_145819658.1 | outer membrane protein | - |
| CV727_RS00030 (CV727_00030) | - | 4604..4951 (-) | 348 | WP_000837033.1 | hypothetical protein | - |
| CV727_RS00035 (CV727_00035) | recG | 5033..6904 (+) | 1872 | WP_145819660.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 479 a.a. Molecular weight: 54913.89 Da Isoelectric Point: 7.0809
>NTDB_id=256589 CV727_RS00010 WP_145819654.1 1597..3036(+) (comH) [Helicobacter pylori strain B136A]
MKKTLCLSFFLIFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNTPMQKPQNKPHLSQQPLQNFSYPESKLGSKNSKNSLLQPL
VTPSKVSPTNETQTSTNDTKPPLKHSSEDQENNLFITPPTEKTLPNSTSNADISENNESNENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTKPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
MKKTLCLSFFLIFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNTPMQKPQNKPHLSQQPLQNFSYPESKLGSKNSKNSLLQPL
VTPSKVSPTNETQTSTNDTKPPLKHSSEDQENNLFITPPTEKTLPNSTSNADISENNESNENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTKPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
Nucleotide
Download Length: 1440 bp
>NTDB_id=256589 CV727_RS00010 WP_145819654.1 1597..3036(+) (comH) [Helicobacter pylori strain B136A]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGATTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACCGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCACACCAAATGCCTTCTTTAAACACGCCCATGCAAAAACCACAAAACAAGCCCCATTTATCGC
AACAACCTCTTCAAAACTTTTCTTACCCAGAATCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCCAGCAAAGTAAGCCCCACTAACGAAACTCAAACGTCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAGCACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGTATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTACACTAAAA
TTTCTGTTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGCACGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AGACAAAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTACTTATTCAACGAAGTTTAA
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGATTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACCGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCACACCAAATGCCTTCTTTAAACACGCCCATGCAAAAACCACAAAACAAGCCCCATTTATCGC
AACAACCTCTTCAAAACTTTTCTTACCCAGAATCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCCAGCAAAGTAAGCCCCACTAACGAAACTCAAACGTCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAGCACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGTATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTACACTAAAA
TTTCTGTTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGCACGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AGACAAAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTACTTATTCAACGAAGTTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comH | Helicobacter pylori 26695 |
94.99 |
100 |
0.95 |