Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CV728_RS07330 Genome accession   NZ_CP024948
Coordinates   1500409..1501722 (+) Length   437 a.a.
NCBI ID   WP_194151432.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1495409..1506722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS07305 (CV728_07315) - 1495557..1495646 (+) 90 Protein_1405 type II restriction endonuclease -
  CV728_RS07310 (CV728_07320) crdR 1495735..1496376 (+) 642 WP_145817988.1 copper response regulator transcription factor CrdR -
  CV728_RS07315 (CV728_07325) crdS 1496342..1497544 (+) 1203 WP_145817990.1 copper-sensing histidine kinase CrdS -
  CV728_RS07320 (CV728_07330) - 1497547..1498941 (+) 1395 WP_145817992.1 NAD(P)H-hydrate dehydratase -
  CV728_RS07325 (CV728_07335) - 1498952..1500412 (+) 1461 WP_145817994.1 replicative DNA helicase -
  CV728_RS07330 (CV728_07340) comEC/comE3 1500409..1501722 (+) 1314 WP_194151432.1 ComEC/Rec2 family competence protein Machinery gene
  CV728_RS07335 (CV728_07345) mqnP 1501793..1502635 (+) 843 WP_265473123.1 menaquinone biosynthesis prenyltransferase MqnP -
  CV728_RS07340 (CV728_07350) - 1502628..1503122 (+) 495 WP_162971486.1 hypothetical protein -
  CV728_RS07345 (CV728_07355) - 1503135..1503641 (+) 507 WP_000953090.1 hypothetical protein -
  CV728_RS07350 (CV728_07360) - 1503635..1504438 (+) 804 WP_145817998.1 phosphatidylserine decarboxylase -
  CV728_RS07355 (CV728_07365) nadA 1504428..1505438 (+) 1011 WP_145818000.1 quinolinate synthase NadA -
  CV728_RS07360 (CV728_07370) nadC 1505438..1506259 (+) 822 WP_145818002.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50318.25 Da        Isoelectric Point: 9.9130

>NTDB_id=256579 CV728_RS07330 WP_194151432.1 1500409..1501722(+) (comEC/comE3) [Helicobacter pylori strain B140]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLRSCFFQTYSFSLTRKHNFKSHLRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKNSSFLMRSFQAISLS
ALVFLNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLFDNVLSMPLTIPTISISSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=256579 CV728_RS07330 WP_194151432.1 1500409..1501722(+) (comEC/comE3) [Helicobacter pylori strain B140]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCGACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTTCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAATCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGTTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
AAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTACATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAAATTCTTCTTTTTTAATGCGATCGTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTAGGGTCTTTATTTGATAATG
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment