Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CV729_RS07755 Genome accession   NZ_CP024947
Coordinates   1567710..1569023 (-) Length   437 a.a.
NCBI ID   WP_194151341.1    Uniprot ID   -
Organism   Helicobacter pylori strain J182     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562710..1574023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV729_RS07725 (CV729_07735) nadC 1563173..1563994 (-) 822 WP_145733399.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CV729_RS07730 (CV729_07740) nadA 1563994..1565004 (-) 1011 WP_145733401.1 quinolinate synthase NadA -
  CV729_RS07735 (CV729_07745) - 1564994..1565797 (-) 804 WP_145733403.1 phosphatidylserine decarboxylase -
  CV729_RS07740 (CV729_07750) - 1565791..1566297 (-) 507 WP_000953105.1 hypothetical protein -
  CV729_RS07745 (CV729_07755) - 1566310..1566804 (-) 495 WP_194151340.1 hypothetical protein -
  CV729_RS07750 (CV729_07760) mqnP 1566797..1567639 (-) 843 WP_265473392.1 menaquinone biosynthesis prenyltransferase MqnP -
  CV729_RS07755 (CV729_07765) comEC/comE3 1567710..1569023 (-) 1314 WP_194151341.1 ComEC/Rec2 family competence protein Machinery gene
  CV729_RS07760 (CV729_07770) - 1569020..1570486 (-) 1467 WP_000349735.1 replicative DNA helicase -
  CV729_RS07765 (CV729_07775) - 1570497..1571897 (-) 1401 WP_145733409.1 NAD(P)H-hydrate dehydratase -
  CV729_RS07770 (CV729_07780) crdS 1571900..1573102 (-) 1203 WP_145733411.1 copper-sensing histidine kinase CrdS -
  CV729_RS07775 (CV729_07785) crdR 1573068..1573709 (-) 642 WP_145733413.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50013.84 Da        Isoelectric Point: 9.7934

>NTDB_id=256566 CV729_RS07755 WP_194151341.1 1567710..1569023(-) (comEC/comE3) [Helicobacter pylori strain J182]
MKDKTFQGAFELLTTPKEYLWCGVILSLLLAINLYLEYLNYQKLDFSKPTSLGAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTEIFFKTSSFLARSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGALLDHLLNMPLTIPTISISSPLWLLGAHLLLT
ILSARSFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=256566 CV729_RS07755 WP_194151341.1 1567710..1569023(-) (comEC/comE3) [Helicobacter pylori strain J182]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTCATTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGTTTGGGCG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACGGAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGGCTTTGTTGGATCACC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTACTTTTAACG
ATTTTAAGCGCGCGTTCTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment