Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   CV729_RS00010 Genome accession   NZ_CP024947
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_145731329.1    Uniprot ID   -
Organism   Helicobacter pylori strain J182     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV729_RS00005 (CV729_00005) dnaA 1..1368 (+) 1368 WP_145731325.1 chromosomal replication initiator protein DnaA -
  CV729_RS00010 (CV729_00010) comH 1597..3036 (+) 1440 WP_145731329.1 competence protein Machinery gene
  CV729_RS00020 (CV729_00020) - 3216..3968 (+) 753 WP_120841329.1 exodeoxyribonuclease III -
  CV729_RS00025 (CV729_00025) - 3965..4600 (-) 636 WP_108262654.1 outer membrane protein -
  CV729_RS00030 (CV729_00030) - 4604..4951 (-) 348 WP_000837033.1 hypothetical protein -
  CV729_RS00035 (CV729_00035) recG 5033..6904 (+) 1872 WP_145731332.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54894.74 Da        Isoelectric Point: 7.0430

>NTDB_id=256548 CV729_RS00010 WP_145731329.1 1597..3036(+) (comH) [Helicobacter pylori strain J182]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQIPSLNAPMQKPQNKPHSSQQPSQNFSYPEPKLGSKNSKNSLLQPL
ITPSKTNPTNETQTPTNDTKPPLKHSSQDQENNLFITPPTEKTLPNNTSNADISENNESNENKDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=256548 CV729_RS00010 WP_145731329.1 1597..3036(+) (comH) [Helicobacter pylori strain J182]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCCAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCGCACGCGCACCAAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCCATTCATCGC
AACAACCTTCTCAAAACTTTTCTTACCCAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
ATAACTCCTAGCAAAACAAACCCCACTAATGAAACTCAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
ACAAGATCAAGAAAACAATCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAAAGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCTTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCCATGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTACACTAAAA
TTTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCCACAGAAAAATGCAAAAGGGCTAGAGCCAGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCGTGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGTAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.451

100

0.965

Multiple sequence alignment