Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CV730_RS07600 Genome accession   NZ_CP024946
Coordinates   1549493..1550806 (-) Length   437 a.a.
NCBI ID   WP_194151268.1    Uniprot ID   -
Organism   Helicobacter pylori strain B147     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544493..1555806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV730_RS07570 (CV730_07585) nadC 1544956..1545777 (-) 822 WP_145729025.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CV730_RS07575 (CV730_07590) nadA 1545777..1546787 (-) 1011 WP_145729027.1 quinolinate synthase NadA -
  CV730_RS07580 (CV730_07595) - 1546777..1547580 (-) 804 WP_145729029.1 phosphatidylserine decarboxylase -
  CV730_RS07585 (CV730_07600) - 1547574..1548080 (-) 507 WP_000953105.1 hypothetical protein -
  CV730_RS07590 (CV730_07605) - 1548093..1548587 (-) 495 WP_194151267.1 hypothetical protein -
  CV730_RS07595 (CV730_07610) mqnP 1548580..1549422 (-) 843 WP_265473492.1 menaquinone biosynthesis prenyltransferase MqnP -
  CV730_RS07600 (CV730_07615) comEC/comE3 1549493..1550806 (-) 1314 WP_194151268.1 ComEC/Rec2 family competence protein Machinery gene
  CV730_RS07605 (CV730_07620) - 1550803..1552269 (-) 1467 WP_145729034.1 replicative DNA helicase -
  CV730_RS07610 (CV730_07625) - 1552280..1553680 (-) 1401 WP_145729036.1 NAD(P)H-hydrate dehydratase -
  CV730_RS07615 (CV730_07630) crdS 1553683..1554885 (-) 1203 WP_145729038.1 copper-sensing histidine kinase CrdS -
  CV730_RS07620 (CV730_07635) crdR 1554851..1555492 (-) 642 WP_145729039.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50060.94 Da        Isoelectric Point: 9.8572

>NTDB_id=256546 CV730_RS07600 WP_194151268.1 1549493..1550806(-) (comEC/comE3) [Helicobacter pylori strain B147]
MKDKTFQGAFELLTTPKEYLVCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTAIKEPLKNLQYRHAQFFGRIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHTRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=256546 CV730_RS07600 WP_194151268.1 1549493..1550806(-) (comEC/comE3) [Helicobacter pylori strain B147]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCTAAAGAATACCTGGTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCAATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCGCCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAGGATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATA
CACGCCACTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTCTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTATTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCAATCCCTTCGCCCTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.339

100

0.963

Multiple sequence alignment