Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV730_RS00850 Genome accession   NZ_CP024946
Coordinates   174247..174528 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain B147     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169247..179528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV730_RS00825 (CV730_00820) groES 169809..170165 (-) 357 WP_120824060.1 co-chaperone GroES -
  CV730_RS00835 (CV730_00830) dnaG 170453..172132 (+) 1680 WP_145728123.1 DNA primase -
  CV730_RS00840 (CV730_00835) - 172129..173181 (+) 1053 WP_145728124.1 MnmA/TRMU family protein -
  CV730_RS00845 (CV730_00840) - 173274..174101 (+) 828 WP_145728125.1 DUF5718 family protein -
  CV730_RS00850 (CV730_00845) comB2 174247..174528 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  CV730_RS00855 (CV730_00850) comB3 174528..174791 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  CV730_RS00860 (CV730_00855) comB4 174793..177156 (+) 2364 WP_145728126.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV730_RS00870 (CV730_00865) - 177460..178800 (+) 1341 WP_194151273.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=256530 CV730_RS00850 WP_001272690.1 174247..174528(+) (comB2) [Helicobacter pylori strain B147]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=256530 CV730_RS00850 WP_001272690.1 174247..174528(+) (comB2) [Helicobacter pylori strain B147]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment