Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   CV730_RS00010 Genome accession   NZ_CP024946
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_145728023.1    Uniprot ID   -
Organism   Helicobacter pylori strain B147     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV730_RS00005 (CV730_00005) dnaA 1..1368 (+) 1368 WP_145728022.1 chromosomal replication initiator protein DnaA -
  CV730_RS00010 (CV730_00010) comH 1597..3036 (+) 1440 WP_145728023.1 competence protein Machinery gene
  CV730_RS00020 (CV730_00020) - 3217..3969 (+) 753 WP_000767555.1 exodeoxyribonuclease III -
  CV730_RS00025 (CV730_00025) - 3966..4601 (-) 636 WP_128001218.1 outer membrane protein -
  CV730_RS00030 (CV730_00030) - 4605..4952 (-) 348 WP_000837038.1 hypothetical protein -
  CV730_RS00035 (CV730_00035) recG 5034..6905 (+) 1872 WP_145728024.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54891.94 Da        Isoelectric Point: 6.9526

>NTDB_id=256528 CV730_RS00010 WP_145728023.1 1597..3036(+) (comH) [Helicobacter pylori strain B147]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
VTPSKISPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADISENNESNENRDNVEKQAVRDANVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEIMRNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=256528 CV730_RS00010 WP_145728023.1 1597..3036(+) (comH) [Helicobacter pylori strain B147]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCACCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCCAGTTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCCACTAACGAAGTTAAAACGCCAACAAACGACACCAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
GTGAAAACAATGAAAGCAACGAAAATAGGGACAATGTGGAAAAACAAGCCGTTAGAGATGCTAATGTTAAAGAATTTGCA
TGCGGAAAGTGGGTCTATGACGATGAAAATTTACAAGCTTACCGCCCAAGCATTTTAAAACGTGTTGATGAAGATAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGTTCTACGGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAATGCGCAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAAGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.407

100

0.954

Multiple sequence alignment