Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CUJ88_RS01555 Genome accession   NZ_CP024937
Coordinates   339235..340755 (-) Length   506 a.a.
NCBI ID   WP_007579702.1    Uniprot ID   -
Organism   Paraburkholderia hospita strain mHSR1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334235..345755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUJ88_RS01530 (CUJ88_01535) - 335000..335635 (-) 636 WP_007579697.1 LON peptidase substrate-binding domain-containing protein -
  CUJ88_RS01535 (CUJ88_01540) rapZ 335700..336593 (-) 894 WP_007579698.1 RNase adapter RapZ -
  CUJ88_RS01540 (CUJ88_01545) hprK 336671..337639 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  CUJ88_RS01545 (CUJ88_01550) - 337884..338399 (-) 516 WP_035538101.1 PTS sugar transporter subunit IIA -
  CUJ88_RS01550 (CUJ88_01555) hpf 338700..339059 (-) 360 WP_007579701.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CUJ88_RS01555 (CUJ88_01560) rpoN/rpoN1 339235..340755 (-) 1521 WP_007579702.1 RNA polymerase factor sigma-54 Machinery gene
  CUJ88_RS01560 (CUJ88_01565) lptB 340973..341755 (-) 783 WP_007579703.1 LPS export ABC transporter ATP-binding protein -
  CUJ88_RS01565 (CUJ88_01570) lptA 341752..342429 (-) 678 WP_007579704.1 lipopolysaccharide transport periplasmic protein LptA -
  CUJ88_RS01570 (CUJ88_01575) lptC 342460..343056 (-) 597 WP_007579705.1 LPS export ABC transporter periplasmic protein LptC -
  CUJ88_RS01575 (CUJ88_01580) - 343053..343613 (-) 561 WP_007579706.1 KdsC family phosphatase -
  CUJ88_RS01580 (CUJ88_01585) kdsD 343613..344596 (-) 984 WP_007579707.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55640.48 Da        Isoelectric Point: 4.8768

>NTDB_id=256485 CUJ88_RS01555 WP_007579702.1 339235..340755(-) (rpoN/rpoN1) [Paraburkholderia hospita strain mHSR1]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAISQNPLLETEDDWIASPLRVAADGTVISQTSQNTSPEGMS
SSPPSSSSSTSSGESQESGEPQGVDEYNGMGSDSNSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILTDLPDELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=256485 CUJ88_RS01555 WP_007579702.1 339235..340755(-) (rpoN/rpoN1) [Paraburkholderia hospita strain mHSR1]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGACTGCTGCA
GCTGTCTACGCTTGAACTGCAACAGGAAGTGTCGATGGCGATCTCCCAGAATCCGTTGCTCGAAACGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTCGCCGCCGACGGCACGGTCATCTCGCAGACGTCGCAGAACACCTCGCCGGAAGGGATGTCG
AGTTCGCCGCCGTCTTCGTCGTCGTCCACTTCCTCCGGCGAAAGCCAGGAGAGCGGCGAACCCCAAGGCGTCGACGAATA
CAACGGCATGGGTTCGGACTCGAACTCAGATGCGAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAATGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGTGTA
ACGGGAGCAAGCGCACGCGACCGCGCGCTCATCACGTTCCTGATCGAATCACTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCACCGATCTCCCCGACGAACTGGAAGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTACTGC
ACAGCTTCGACCCAGCGGGTGTCGGCGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAGTTGTGCCGGCTCGAGCCGTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCATCTGGAGCTGCTCGCCGCGCGCGACTTCACGCGTCTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCGGCCT
ACGGCAAGGCCGAAGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAACTGAAT
CCGGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAGATCCCAGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.996

100

0.67

Multiple sequence alignment