Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CVS42_RS19205 Genome accession   NZ_CP024933
Coordinates   4141650..4143089 (-) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain X12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4136650..4148089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVS42_RS19175 (CVS42_19185) dagF 4136919..4137659 (+) 741 WP_100646906.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  CVS42_RS19180 (CVS42_19190) - 4137766..4139670 (+) 1905 WP_100646907.1 transcription antiterminator -
  CVS42_RS19185 (CVS42_19195) npr 4139688..4139960 (-) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  CVS42_RS19190 (CVS42_19200) rapZ 4139981..4140847 (-) 867 WP_100646908.1 RNase adapter RapZ -
  CVS42_RS19195 (CVS42_19205) ptsN 4140893..4141339 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CVS42_RS19200 (CVS42_19210) hpf 4141342..4141629 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  CVS42_RS19205 (CVS42_19215) rpoN/rpoN1 4141650..4143089 (-) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  CVS42_RS19210 (CVS42_19220) lptB 4143155..4143880 (-) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  CVS42_RS19215 (CVS42_19225) lptA 4143884..4144411 (-) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  CVS42_RS19220 (CVS42_19230) lptC 4144398..4144958 (-) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  CVS42_RS19225 (CVS42_19235) kdsC 4144955..4145509 (-) 555 WP_047438734.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  CVS42_RS19230 (CVS42_19240) - 4145509..4146504 (-) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  CVS42_RS19235 (CVS42_19245) mlaF 4146712..4147512 (+) 801 WP_100646909.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=256460 CVS42_RS19205 WP_005336331.1 4141650..4143089(-) (rpoN/rpoN1) [Aeromonas veronii strain X12]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=256460 CVS42_RS19205 WP_005336331.1 4141650..4143089(-) (rpoN/rpoN1) [Aeromonas veronii strain X12]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCTGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGATGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGTATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGTAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491

Multiple sequence alignment