Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CVD07_RS17390 Genome accession   NZ_CP024897
Coordinates   3530188..3530529 (-) Length   113 a.a.
NCBI ID   WP_053285347.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3525188..3535529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS17375 (CVD07_17425) - 3525456..3528230 (+) 2775 WP_100262053.1 DEAD/DEAH box helicase -
  CVD07_RS17380 (CVD07_17430) - 3528343..3529200 (-) 858 WP_021494827.1 Cof-type HAD-IIB family hydrolase -
  CVD07_RS17385 (CVD07_17435) - 3529197..3529979 (-) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  CVD07_RS17390 (CVD07_17440) ssbB 3530188..3530529 (-) 342 WP_053285347.1 single-stranded DNA-binding protein Machinery gene
  CVD07_RS17395 (CVD07_17445) - 3530627..3530980 (-) 354 WP_003151247.1 hypothetical protein -
  CVD07_RS17400 (CVD07_17450) - 3531153..3531563 (+) 411 WP_007407558.1 YwpF-like family protein -
  CVD07_RS17405 (CVD07_17455) mscL 3531609..3532004 (-) 396 WP_014419073.1 large conductance mechanosensitive channel protein MscL -
  CVD07_RS17410 (CVD07_17460) fabZ 3532060..3532485 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CVD07_RS17415 (CVD07_17465) - 3532681..3533745 (+) 1065 WP_017418759.1 tetratricopeptide repeat protein -
  CVD07_RS17420 (CVD07_17470) - 3533763..3534584 (-) 822 WP_014419076.1 flagellar hook-basal body protein -
  CVD07_RS17425 (CVD07_17475) - 3534609..3535406 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12618.50 Da        Isoelectric Point: 9.0994

>NTDB_id=256279 CVD07_RS17390 WP_053285347.1 3530188..3530529(-) (ssbB) [Bacillus velezensis strain CN026]
MFNHVMLVGLLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=256279 CVD07_RS17390 WP_053285347.1 3530188..3530529(-) (ssbB) [Bacillus velezensis strain CN026]
TTGTTTAACCACGTTATGCTTGTCGGGCTGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
GCATATTACGCTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

93.805

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363

Multiple sequence alignment