Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CVD07_RS08610 Genome accession   NZ_CP024897
Coordinates   1764421..1764855 (+) Length   144 a.a.
NCBI ID   WP_100261795.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1759421..1769855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS08605 (CVD07_08630) - 1762921..1764132 (-) 1212 WP_100262128.1 cytochrome P450 -
  CVD07_RS08610 (CVD07_08635) nucA/comI 1764421..1764855 (+) 435 WP_100261795.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CVD07_RS08615 (CVD07_08640) - 1764915..1765670 (+) 756 WP_003154084.1 YoaK family protein -
  CVD07_RS08620 (CVD07_08645) - 1765704..1766066 (-) 363 WP_007410383.1 hypothetical protein -
  CVD07_RS08625 (CVD07_08650) - 1766258..1767586 (-) 1329 WP_100261796.1 S8 family peptidase -
  CVD07_RS08630 (CVD07_08655) - 1767759..1767992 (+) 234 WP_100262129.1 hypothetical protein -
  CVD07_RS08635 (CVD07_08660) - 1768248..1768955 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  CVD07_RS08640 (CVD07_08665) - 1769015..1769467 (+) 453 WP_014305039.1 OsmC family protein -
  CVD07_RS08645 (CVD07_08670) - 1769481..1769834 (-) 354 WP_100261797.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15586.50 Da        Isoelectric Point: 6.7110

>NTDB_id=256246 CVD07_RS08610 WP_100261795.1 1764421..1764855(+) (nucA/comI) [Bacillus velezensis strain CN026]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISEGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=256246 CVD07_RS08610 WP_100261795.1 1764421..1764855(+) (nucA/comI) [Bacillus velezensis strain CN026]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGAAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGAGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493

Multiple sequence alignment