Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CVD07_RS07165 Genome accession   NZ_CP024897
Coordinates   1373801..1374085 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368801..1379085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS07140 (CVD07_07165) - 1370045..1370953 (+) 909 WP_025649506.1 ketopantoate reductase family protein -
  CVD07_RS07145 (CVD07_07170) - 1370984..1372216 (-) 1233 WP_007409644.1 aminopeptidase -
  CVD07_RS07150 (CVD07_07175) - 1372317..1372451 (-) 135 WP_003154559.1 protein YkpC -
  CVD07_RS07155 (CVD07_07180) mreBH 1372523..1373530 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  CVD07_RS07165 (CVD07_07190) abrB 1373801..1374085 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CVD07_RS07170 (CVD07_07195) - 1374258..1375562 (+) 1305 WP_014417634.1 ATP-binding protein -
  CVD07_RS07175 (CVD07_07200) - 1375564..1376391 (+) 828 WP_094295721.1 gamma-glutamylcyclotransferase family protein -
  CVD07_RS07180 (CVD07_07205) ktrC 1376432..1377097 (+) 666 WP_100261756.1 Ktr system potassium transporter KtrC -
  CVD07_RS07185 (CVD07_07210) ade 1377246..1378979 (+) 1734 WP_022553404.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=256241 CVD07_RS07165 WP_024085249.1 1373801..1374085(+) (abrB) [Bacillus velezensis strain CN026]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=256241 CVD07_RS07165 WP_024085249.1 1373801..1374085(+) (abrB) [Bacillus velezensis strain CN026]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment