Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CVD07_RS07050 Genome accession   NZ_CP024897
Coordinates   1353303..1353899 (+) Length   198 a.a.
NCBI ID   WP_100261752.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348303..1358899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS07020 (CVD07_07045) - 1348517..1348972 (+) 456 WP_007409622.1 flavodoxin -
  CVD07_RS07025 (CVD07_07050) dapD 1349054..1349764 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CVD07_RS07030 (CVD07_07055) - 1349835..1350959 (+) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  CVD07_RS07035 (CVD07_07060) - 1351020..1351265 (+) 246 WP_003154596.1 YkuS family protein -
  CVD07_RS07040 (CVD07_07065) - 1351299..1352105 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  CVD07_RS07045 (CVD07_07070) - 1352393..1352851 (+) 459 WP_100261751.1 TlpA disulfide reductase family protein -
  CVD07_RS07050 (CVD07_07075) rok 1353303..1353899 (+) 597 WP_100261752.1 transcriptional regulator Rok Regulator
  CVD07_RS07055 (CVD07_07080) - 1353920..1354912 (-) 993 WP_014417619.1 hypothetical protein -
  CVD07_RS07060 (CVD07_07085) - 1355058..1355660 (+) 603 WP_025649507.1 molybdenum cofactor guanylyltransferase -
  CVD07_RS07065 (CVD07_07090) - 1355712..1356731 (+) 1020 WP_095059974.1 molybdopterin-synthase adenylyltransferase MoeB -
  CVD07_RS07070 (CVD07_07095) glp 1356749..1358041 (+) 1293 WP_100261753.1 gephyrin-like molybdotransferase Glp -
  CVD07_RS07075 (CVD07_07100) mobB 1358002..1358523 (+) 522 WP_032863763.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22555.60 Da        Isoelectric Point: 9.6909

>NTDB_id=256240 CVD07_RS07050 WP_100261752.1 1353303..1353899(+) (rok) [Bacillus velezensis strain CN026]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYTKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=256240 CVD07_RS07050 WP_100261752.1 1353303..1353899(+) (rok) [Bacillus velezensis strain CN026]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATACAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.567

97.98

0.838

Multiple sequence alignment