Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CVD07_RS06950 Genome accession   NZ_CP024897
Coordinates   1337438..1337902 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CN026     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332438..1342902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS06930 (CVD07_06950) - 1332919..1334739 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  CVD07_RS06935 (CVD07_06955) - 1334764..1335933 (-) 1170 WP_100261748.1 aminotransferase A -
  CVD07_RS19960 (CVD07_06960) - 1336134..1336295 (-) 162 WP_007409608.1 hypothetical protein -
  CVD07_RS06945 (CVD07_06970) cheV 1336484..1337395 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  CVD07_RS06950 (CVD07_06975) kre 1337438..1337902 (-) 465 WP_003154622.1 YkyB family protein Regulator
  CVD07_RS06955 (CVD07_06980) - 1338025..1339317 (-) 1293 WP_014417606.1 MFS transporter -
  CVD07_RS06960 (CVD07_06985) - 1339393..1339887 (-) 495 WP_094296114.1 L,D-transpeptidase family protein -
  CVD07_RS06965 (CVD07_06990) - 1339962..1340825 (-) 864 WP_100261749.1 metallophosphoesterase -
  CVD07_RS06970 (CVD07_06995) fadH 1340969..1341733 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  CVD07_RS06975 (CVD07_07000) - 1341847..1342396 (+) 550 Protein_1335 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=256239 CVD07_RS06950 WP_003154622.1 1337438..1337902(-) (kre) [Bacillus velezensis strain CN026]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=256239 CVD07_RS06950 WP_003154622.1 1337438..1337902(-) (kre) [Bacillus velezensis strain CN026]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCTGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment