Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CVD07_RS01600 Genome accession   NZ_CP024897
Coordinates   302588..303025 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CN026     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 297588..308025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS01575 (CVD07_01575) - 298608..299744 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  CVD07_RS01580 (CVD07_01580) - 299759..300193 (+) 435 WP_014416871.1 RDD family protein -
  CVD07_RS01585 (CVD07_01585) - 300265..300588 (+) 324 WP_007409357.1 YckD family protein -
  CVD07_RS01590 (CVD07_01590) - 300692..302128 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  CVD07_RS01595 (CVD07_01595) nin/comJ 302169..302567 (-) 399 WP_100261594.1 competence protein ComJ Regulator
  CVD07_RS01600 (CVD07_01600) nucA/comI 302588..303025 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CVD07_RS01605 (CVD07_01605) hxlB 303356..303913 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  CVD07_RS01610 (CVD07_01610) hxlA 303910..304545 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  CVD07_RS01615 (CVD07_01615) - 304777..305139 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=256218 CVD07_RS01600 WP_003156588.1 302588..303025(-) (nucA/comI) [Bacillus velezensis strain CN026]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=256218 CVD07_RS01600 WP_003156588.1 302588..303025(-) (nucA/comI) [Bacillus velezensis strain CN026]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment