Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM344_RS01370 Genome accession   NZ_CP024886
Coordinates   281760..282389 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 276760..287389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM344_RS01345 (AM344_01345) ycbZ 277162..278922 (-) 1761 WP_000156501.1 Lon protease family protein -
  AM344_RS01350 (AM344_01350) matP 279108..279560 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AM344_RS01355 (AM344_01355) ompA 279637..280677 (-) 1041 WP_001682780.1 porin OmpA -
  AM344_RS01365 (AM344_01365) sulA 281033..281542 (-) 510 WP_021523910.1 SOS-induced cell division inhibitor SulA -
  AM344_RS01370 (AM344_01370) sxy/tfoX 281760..282389 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM344_RS01375 (AM344_01375) yccS 282352..284514 (-) 2163 WP_000875040.1 YccS family putative transporter -
  AM344_RS01380 (AM344_01380) yccF 284524..284970 (-) 447 WP_001261236.1 YccF domain-containing protein -
  AM344_RS01385 (AM344_01385) helD 285093..287147 (+) 2055 WP_021523911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=256157 AM344_RS01370 WP_000839153.1 281760..282389(+) (sxy/tfoX) [Escherichia coli strain AR_0017]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=256157 AM344_RS01370 WP_000839153.1 281760..282389(+) (sxy/tfoX) [Escherichia coli strain AR_0017]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACTTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment