Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM336_RS16580 Genome accession   NZ_CP024885
Coordinates   3319499..3320122 (+) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain AR_0009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3314499..3325122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM336_RS16560 (AM336_16505) - 3314648..3316405 (-) 1758 WP_032705615.1 Lon protease family protein -
  AM336_RS16565 (AM336_16510) matP 3316591..3317043 (+) 453 WP_015367432.1 macrodomain Ter protein MatP -
  AM336_RS16570 (AM336_16515) ompA 3317135..3318187 (-) 1053 WP_080473199.1 porin OmpA -
  AM336_RS16575 (AM336_16520) sulA 3318540..3319049 (-) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  AM336_RS16580 (AM336_16525) sxy/tfoX 3319499..3320122 (+) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  AM336_RS16585 (AM336_16530) yccS 3320110..3322245 (-) 2136 WP_015367427.1 YccS family putative transporter -
  AM336_RS16590 (AM336_16535) - 3322263..3322709 (-) 447 WP_015367426.1 YccF domain-containing protein -
  AM336_RS16595 (AM336_16540) helD 3322833..3324887 (+) 2055 WP_015367425.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=256153 AM336_RS16580 WP_026612357.1 3319499..3320122(+) (sxy/tfoX) [Klebsiella aerogenes strain AR_0009]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=256153 AM336_RS16580 WP_026612357.1 3319499..3320122(+) (sxy/tfoX) [Klebsiella aerogenes strain AR_0009]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493

Multiple sequence alignment