Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM334_RS22060 Genome accession   NZ_CP024883
Coordinates   4460254..4460877 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain AR_0007     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4455254..4465877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM334_RS22045 (AM334_21975) helD 4455489..4457543 (-) 2055 WP_100279942.1 DNA helicase IV -
  AM334_RS22050 (AM334_21980) - 4457667..4458113 (+) 447 WP_020079238.1 YccF domain-containing protein -
  AM334_RS22055 (AM334_21985) yccS 4458131..4460266 (+) 2136 WP_020079239.1 YccS family putative transporter -
  AM334_RS22060 (AM334_21990) sxy/tfoX 4460254..4460877 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  AM334_RS22065 (AM334_21995) sulA 4461327..4461836 (+) 510 WP_100279943.1 SOS-induced cell division inhibitor SulA -
  AM334_RS22070 (AM334_22000) ompA 4462189..4463241 (+) 1053 WP_080473199.1 porin OmpA -
  AM334_RS22075 (AM334_22005) matP 4463333..4463785 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  AM334_RS22080 (AM334_22010) - 4463971..4465728 (+) 1758 WP_047739915.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=256133 AM334_RS22060 WP_026612357.1 4460254..4460877(-) (sxy/tfoX) [Klebsiella aerogenes strain AR_0007]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=256133 AM334_RS22060 WP_026612357.1 4460254..4460877(-) (sxy/tfoX) [Klebsiella aerogenes strain AR_0007]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493

Multiple sequence alignment