Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM349_RS01205 Genome accession   NZ_CP024881
Coordinates   256682..257296 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain AR_0022     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 251682..262296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM349_RS01185 (AM349_01190) - 252052..253812 (-) 1761 WP_003035878.1 AAA family ATPase -
  AM349_RS01190 (AM349_01195) matP 253998..254450 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AM349_RS01195 (AM349_01200) ompA 254539..255597 (-) 1059 WP_003836839.1 porin OmpA -
  AM349_RS01200 (AM349_01205) sulA 255955..256464 (-) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  AM349_RS01205 (AM349_01210) sxy/tfoX 256682..257296 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AM349_RS01210 (AM349_01215) yccS 257274..259427 (-) 2154 WP_032941200.1 YccS family putative transporter -
  AM349_RS01215 (AM349_01220) - 259446..259892 (-) 447 WP_003035892.1 YccF domain-containing protein -
  AM349_RS01220 (AM349_01225) helD 260018..262072 (+) 2055 WP_032948946.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=256093 AM349_RS01205 WP_003035889.1 256682..257296(+) (sxy/tfoX) [Citrobacter freundii strain AR_0022]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=256093 AM349_RS01205 WP_003035889.1 256682..257296(+) (sxy/tfoX) [Citrobacter freundii strain AR_0022]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment