Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM345_RS09645 Genome accession   NZ_CP024880
Coordinates   1974324..1974947 (+) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain AR_0018     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1969324..1979947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM345_RS09625 (AM345_09590) - 1969473..1971230 (-) 1758 WP_048230746.1 AAA family ATPase -
  AM345_RS09630 (AM345_09595) matP 1971416..1971868 (+) 453 WP_015367432.1 macrodomain Ter protein MatP -
  AM345_RS09635 (AM345_09600) ompA 1971960..1973012 (-) 1053 WP_026612358.1 porin OmpA -
  AM345_RS09640 (AM345_09605) sulA 1973365..1973874 (-) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  AM345_RS09645 (AM345_09610) sxy/tfoX 1974324..1974947 (+) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  AM345_RS09650 (AM345_09615) yccS 1974935..1977070 (-) 2136 WP_020079239.1 YccS family putative transporter -
  AM345_RS09655 (AM345_09620) - 1977088..1977534 (-) 447 WP_020079238.1 YccF domain-containing protein -
  AM345_RS09660 (AM345_09625) helD 1977658..1979712 (+) 2055 WP_020079237.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=256081 AM345_RS09645 WP_026612357.1 1974324..1974947(+) (sxy/tfoX) [Klebsiella aerogenes strain AR_0018]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=256081 AM345_RS09645 WP_026612357.1 1974324..1974947(+) (sxy/tfoX) [Klebsiella aerogenes strain AR_0018]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493

Multiple sequence alignment