Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CU111_RS10715 Genome accession   NZ_CP024874
Coordinates   2146814..2147410 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain NH25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2141814..2152410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU111_RS10700 (CU111_10730) helD 2142022..2144076 (-) 2055 WP_020324408.1 DNA helicase IV -
  CU111_RS10705 (CU111_10735) - 2144201..2144647 (+) 447 WP_002898425.1 YccF domain-containing protein -
  CU111_RS10710 (CU111_10740) yccS 2144665..2146800 (+) 2136 WP_004147856.1 YccS family putative transporter -
  CU111_RS10715 (CU111_10745) sxy/tfoX 2146814..2147410 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CU111_RS10730 (CU111_10760) ltrA 2148102..2149589 (+) 1488 WP_023332914.1 group II intron reverse transcriptase/maturase -
  CU111_RS10740 (CU111_10770) sulA 2149668..2150177 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  CU111_RS10745 (CU111_10775) ompA 2150530..2151600 (+) 1071 WP_002898408.1 porin OmpA -
  CU111_RS10750 (CU111_10780) matP 2151732..2152184 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=256054 CU111_RS10715 WP_004179217.1 2146814..2147410(-) (sxy/tfoX) [Klebsiella pneumoniae strain NH25]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=256054 CU111_RS10715 WP_004179217.1 2146814..2147410(-) (sxy/tfoX) [Klebsiella pneumoniae strain NH25]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment