Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LSL_RS03385 Genome accession   NC_007929
Coordinates   581287..582954 (+) Length   555 a.a.
NCBI ID   WP_003699855.1    Uniprot ID   C2EEM9
Organism   Ligilactobacillus salivarius UCC118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 576287..587954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSL_RS03355 (LSL_0533) folD 576669..577526 (+) 858 WP_011475808.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  LSL_RS03360 (LSL_0534) xseA 577519..578859 (+) 1341 WP_011475809.1 exodeoxyribonuclease VII large subunit -
  LSL_RS03365 (LSL_0535) - 578859..579086 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  LSL_RS03370 (LSL_0536) - 579052..579969 (+) 918 WP_003699850.1 polyprenyl synthetase family protein -
  LSL_RS03375 (LSL_0537) - 579972..580799 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  LSL_RS03380 (LSL_0538) - 580824..581282 (+) 459 WP_003699854.1 arginine repressor -
  LSL_RS03385 (LSL_0539) recN 581287..582954 (+) 1668 WP_003699855.1 DNA repair protein RecN Machinery gene
  LSL_RS03390 (LSL_0540) lexA 583018..583638 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  LSL_RS03395 (LSL_0541) - 583749..584039 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  LSL_RS03400 (LSL_0542) - 584166..584390 (+) 225 WP_003699860.1 YneF family protein -
  LSL_RS03405 (LSL_0543) yihA 584473..585063 (+) 591 WP_003709878.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LSL_RS03410 (LSL_0544) - 585081..585380 (+) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  LSL_RS03415 (LSL_0545) - 585484..587298 (+) 1815 WP_225355305.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63193.92 Da        Isoelectric Point: 4.8501

>NTDB_id=25602 LSL_RS03385 WP_003699855.1 581287..582954(+) (recN) [Ligilactobacillus salivarius UCC118]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKCLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=25602 LSL_RS03385 WP_003699855.1 581287..582954(+) (recN) [Ligilactobacillus salivarius UCC118]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTAAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATGTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C2EEM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.427

100

0.499

Multiple sequence alignment