Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM342_RS22645 Genome accession   NZ_CP024862
Coordinates   4447886..4448515 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0015     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4442886..4453515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM342_RS22620 (AM342_22645) ycbZ 4443276..4445036 (-) 1761 WP_029701764.1 Lon protease family protein -
  AM342_RS22625 (AM342_22650) matP 4445222..4445674 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM342_RS22630 (AM342_22655) ompA 4445749..4446801 (-) 1053 WP_000750418.1 porin OmpA -
  AM342_RS22640 (AM342_22665) sulA 4447158..4447667 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM342_RS22645 (AM342_22670) sxy/tfoX 4447886..4448515 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM342_RS22650 (AM342_22675) yccS 4448478..4450640 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AM342_RS22655 (AM342_22680) yccF 4450650..4451096 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AM342_RS22660 (AM342_22685) helD 4451219..4453273 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=255988 AM342_RS22645 WP_000839153.1 4447886..4448515(+) (sxy/tfoX) [Escherichia coli strain AR_0015]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=255988 AM342_RS22645 WP_000839153.1 4447886..4448515(+) (sxy/tfoX) [Escherichia coli strain AR_0015]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment