Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CSC33_RS26670 Genome accession   NZ_CP029660
Coordinates   5595648..5596013 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5590648..5601013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS26640 (CSC33_5395) pyrR 5591270..5591782 (-) 513 WP_033972296.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  CSC33_RS26645 (CSC33_5396) ruvX 5591894..5592328 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  CSC33_RS26650 (CSC33_5397) - 5592328..5592897 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  CSC33_RS26655 (CSC33_5398) - 5592946..5593839 (-) 894 WP_003084580.1 TonB family protein -
  CSC33_RS26660 (CSC33_5399) gshB 5593986..5594939 (-) 954 WP_003100943.1 glutathione synthase -
  CSC33_RS26665 (CSC33_5400) pilG 5595194..5595601 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  CSC33_RS26670 (CSC33_5401) pilH 5595648..5596013 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  CSC33_RS26675 (CSC33_5402) - 5596064..5596600 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  CSC33_RS26680 (CSC33_5403) pilJ 5596685..5598733 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  CSC33_RS26685 (CSC33_5404) pilK 5598794..5599669 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=255972 CSC33_RS26670 WP_003084587.1 5595648..5596013(+) (pilH) [Pseudomonas aeruginosa strain AR_0446]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=255972 CSC33_RS26670 WP_003084587.1 5595648..5596013(+) (pilH) [Pseudomonas aeruginosa strain AR_0446]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364