Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   CSC33_RS24615 Genome accession   NZ_CP029660
Coordinates   5162922..5163947 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5157922..5168947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS24595 (CSC33_4977) trkA 5158576..5159949 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  CSC33_RS24600 (CSC33_4978) rsmB 5159977..5161281 (-) 1305 WP_110194548.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CSC33_RS24605 (CSC33_4979) fmt 5161278..5162222 (-) 945 WP_073648829.1 methionyl-tRNA formyltransferase -
  CSC33_RS24610 (CSC33_4980) def 5162277..5162783 (-) 507 WP_003097293.1 peptide deformylase -
  CSC33_RS24615 (CSC33_4981) tsaP 5162922..5163947 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CSC33_RS24620 (CSC33_4982) dprA 5164083..5165171 (+) 1089 WP_110194549.1 DNA-processing protein DprA Machinery gene
  CSC33_RS24625 (CSC33_4983) - 5165212..5165769 (+) 558 WP_058179441.1 Sua5/YciO/YrdC/YwlC family protein -
  CSC33_RS24630 (CSC33_4984) - 5165779..5166756 (-) 978 WP_034037807.1 NADPH:quinone reductase -
  CSC33_RS24635 (CSC33_4985) hemF 5166947..5167864 (+) 918 WP_110194550.1 oxygen-dependent coproporphyrinogen oxidase -
  CSC33_RS24640 (CSC33_4986) aroE 5167922..5168746 (+) 825 WP_110194551.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=255965 CSC33_RS24615 WP_003097294.1 5162922..5163947(+) (tsaP) [Pseudomonas aeruginosa strain AR_0446]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=255965 CSC33_RS24615 WP_003097294.1 5162922..5163947(+) (tsaP) [Pseudomonas aeruginosa strain AR_0446]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGTCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGTTGAACCGTGGCGAATCACGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCTTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTTACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGTAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393