Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM333_RS14365 Genome accession   NZ_CP024851
Coordinates   2825891..2826520 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2820891..2831520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM333_RS14340 (AM333_14355) ycbZ 2821281..2823041 (-) 1761 WP_029701764.1 Lon protease family protein -
  AM333_RS14345 (AM333_14360) matP 2823227..2823679 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM333_RS14350 (AM333_14365) ompA 2823754..2824806 (-) 1053 WP_000750418.1 porin OmpA -
  AM333_RS14360 (AM333_14375) sulA 2825163..2825672 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM333_RS14365 (AM333_14380) sxy/tfoX 2825891..2826520 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM333_RS14370 (AM333_14385) yccS 2826483..2828645 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AM333_RS14375 (AM333_14390) yccF 2828655..2829101 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AM333_RS14380 (AM333_14395) helD 2829224..2831278 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=255913 AM333_RS14365 WP_000839153.1 2825891..2826520(+) (sxy/tfoX) [Escherichia coli strain AR_0006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=255913 AM333_RS14365 WP_000839153.1 2825891..2826520(+) (sxy/tfoX) [Escherichia coli strain AR_0006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment