Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   CSC33_RS04410 Genome accession   NZ_CP029660
Coordinates   939255..939611 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 934255..944611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS04385 (CSC33_0883) fabF 934467..935711 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  CSC33_RS04390 (CSC33_0884) pabC 935711..936526 (+) 816 WP_110193713.1 aminodeoxychorismate lyase -
  CSC33_RS04395 (CSC33_0885) mltG 936532..937581 (+) 1050 WP_033970442.1 endolytic transglycosylase MltG -
  CSC33_RS04400 (CSC33_0886) tmk 937610..938242 (+) 633 WP_042164414.1 dTMP kinase -
  CSC33_RS04405 (CSC33_0887) - 938235..939221 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  CSC33_RS04410 (CSC33_0888) pilZ 939255..939611 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  CSC33_RS04415 (CSC33_0889) - 939626..940402 (+) 777 WP_033970427.1 TatD family hydrolase -
  CSC33_RS04420 (CSC33_0890) - 940628..941761 (-) 1134 WP_058179033.1 aminotransferase class V-fold PLP-dependent enzyme -
  CSC33_RS04425 (CSC33_0891) - 941847..942485 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  CSC33_RS04430 (CSC33_0892) - 942615..943511 (+) 897 WP_003091113.1 radical SAM protein -
  CSC33_RS04435 (CSC33_0893) - 943576..944208 (+) 633 WP_039027682.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=255895 CSC33_RS04410 WP_003091119.1 939255..939611(+) (pilZ) [Pseudomonas aeruginosa strain AR_0446]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=255895 CSC33_RS04410 WP_003091119.1 939255..939611(+) (pilZ) [Pseudomonas aeruginosa strain AR_0446]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449