Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CSC33_RS03425 Genome accession   NZ_CP029660
Coordinates   728162..728491 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 723162..733491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS03410 (CSC33_0681) - 723231..724250 (+) 1020 WP_110193687.1 glycosyltransferase family 4 protein -
  CSC33_RS03415 - 724317..725423 (+) 1107 Protein_663 IS3 family transposase -
  CSC33_RS03420 (CSC33_0686) - 725974..727971 (+) 1998 WP_110193688.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  CSC33_RS03425 (CSC33_0687) comEA/comE1 728162..728491 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  CSC33_RS03435 (CSC33_0689) - 728708..729904 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  CSC33_RS03440 (CSC33_0690) uvrB 730092..732104 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=255887 CSC33_RS03425 WP_003091430.1 728162..728491(+) (comEA/comE1) [Pseudomonas aeruginosa strain AR_0446]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=255887 CSC33_RS03425 WP_003091430.1 728162..728491(+) (comEA/comE1) [Pseudomonas aeruginosa strain AR_0446]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385