Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OA04_RS02685 Genome accession   NZ_CP024842
Coordinates   577827..579209 (-) Length   460 a.a.
NCBI ID   WP_103861509.1    Uniprot ID   -
Organism   Pectobacterium versatile strain 3-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 572827..584209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OA04_RS02655 (OA04_05400) pepP 573020..574345 (-) 1326 WP_107332253.1 Xaa-Pro aminopeptidase -
  OA04_RS02660 (OA04_05410) - 574403..574990 (-) 588 WP_107332254.1 YecA family protein -
  OA04_RS02665 (OA04_05420) zapA 575183..575512 (+) 330 WP_010284667.1 cell division protein ZapA -
  OA04_RS02675 (OA04_05440) - 575810..576457 (+) 648 WP_107333682.1 5-formyltetrahydrofolate cyclo-ligase -
  OA04_RS02680 (OA04_05450) nadR 576454..577707 (-) 1254 WP_107332255.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  OA04_RS02685 (OA04_05460) radA 577827..579209 (-) 1383 WP_103861509.1 DNA repair protein RadA Machinery gene
  OA04_RS02690 (OA04_05470) serB 579227..580204 (-) 978 WP_107332256.1 phosphoserine phosphatase -
  OA04_RS02695 (OA04_05480) - 580361..581059 (+) 699 WP_010296287.1 YtjB family periplasmic protein -
  OA04_RS02700 (OA04_05490) - 581114..582022 (-) 909 WP_107332257.1 hypothetical protein -
  OA04_RS02705 (OA04_05500) prfC 582316..583905 (+) 1590 WP_039481772.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49614.22 Da        Isoelectric Point: 7.4463

>NTDB_id=255765 OA04_RS02685 WP_103861509.1 577827..579209(-) (radA) [Pectobacterium versatile strain 3-2]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLVSASVSRSDRLTGYAGESAGISRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=255765 OA04_RS02685 WP_103861509.1 577827..579209(-) (radA) [Pectobacterium versatile strain 3-2]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGCAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGTCTCGGCGTCTGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCATCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCGCACAGACTCAATCTGCCGACGCAGAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTTCTCAGCCGTGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTAGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTATTCGGCGTGAAAAAGCTAGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus mitis NCTC 12261

42.857

98.913

0.424
  radA Streptococcus pneumoniae Rx1

42.857

98.913

0.424
  radA Streptococcus pneumoniae D39

42.857

98.913

0.424
  radA Streptococcus pneumoniae R6

42.857

98.913

0.424
  radA Streptococcus pneumoniae TIGR4

42.857

98.913

0.424
  radA Streptococcus mitis SK321

42.857

98.913

0.424

Multiple sequence alignment