Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CU076_RS14075 Genome accession   NZ_CP024830
Coordinates   2757771..2758400 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CREC-532     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2752771..2763400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU076_RS14050 (CU076_14055) ycbZ 2753172..2754932 (-) 1761 WP_000152888.1 Lon protease family protein -
  CU076_RS14055 (CU076_14060) matP 2755118..2755570 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CU076_RS14060 (CU076_14065) ompA 2755646..2756686 (-) 1041 WP_000750416.1 porin OmpA -
  CU076_RS14070 (CU076_14075) sulA 2757043..2757552 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CU076_RS14075 (CU076_14080) sxy/tfoX 2757771..2758400 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CU076_RS14080 (CU076_14085) yccS 2758363..2760525 (-) 2163 WP_000875058.1 YccS family putative transporter -
  CU076_RS14085 (CU076_14090) yccF 2760535..2760981 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CU076_RS14090 (CU076_14095) helD 2761104..2763158 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=255708 CU076_RS14075 WP_000839153.1 2757771..2758400(+) (sxy/tfoX) [Escherichia coli strain CREC-532]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=255708 CU076_RS14075 WP_000839153.1 2757771..2758400(+) (sxy/tfoX) [Escherichia coli strain CREC-532]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment