Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   UTI89_RS20215 Genome accession   NC_007946
Coordinates   4070419..4071087 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli UTI89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4065419..4076087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTI89_RS20185 (UTI89_C4175) rfaQ 4065597..4066655 (-) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -
  UTI89_RS20190 (UTI89_C4176) waaA 4067068..4068345 (+) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  UTI89_RS20195 (UTI89_C4177) coaD 4068353..4068832 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  UTI89_RS20200 (UTI89_C4178) mutM 4068871..4069680 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  UTI89_RS20205 (UTI89_C4180) rpmG 4069778..4069945 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  UTI89_RS20210 (UTI89_C4181) rpmB 4069966..4070202 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  UTI89_RS20215 (UTI89_C4182) radC 4070419..4071087 (-) 669 WP_001297375.1 RadC family protein Machinery gene
  UTI89_RS20220 (UTI89_C4183) coaBC 4071259..4072479 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  UTI89_RS20225 (UTI89_C4184) dut 4072457..4072915 (+) 459 WP_000976066.1 dUTP diphosphatase -
  UTI89_RS20230 (UTI89_C4185) slmA 4073022..4073618 (+) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  UTI89_RS20235 (UTI89_C4186) pyrE 4073655..4074296 (-) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  UTI89_RS20240 (UTI89_C4187) rph 4074362..4075078 (-) 717 WP_001247093.1 ribonuclease PH -
  UTI89_RS20245 (UTI89_C4188) yicC 4075205..4076068 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=25570 UTI89_RS20215 WP_001297375.1 4070419..4071087(-) (radC) [Escherichia coli UTI89]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=25570 UTI89_RS20215 WP_001297375.1 4070419..4071087(-) (radC) [Escherichia coli UTI89]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment