Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CU078_RS05960 Genome accession   NZ_CP024821
Coordinates   1071178..1071807 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CREC-591     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066178..1076807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU078_RS05945 (CU078_05945) helD 1066420..1068474 (-) 2055 WP_000420533.1 DNA helicase IV -
  CU078_RS05950 (CU078_05950) yccF 1068597..1069043 (+) 447 WP_001261231.1 YccF domain-containing protein -
  CU078_RS05955 (CU078_05955) yccS 1069053..1071215 (+) 2163 WP_000875020.1 YccS family putative transporter -
  CU078_RS05960 (CU078_05960) sxy/tfoX 1071178..1071807 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CU078_RS05965 (CU078_05965) sulA 1072026..1072535 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CU078_RS05975 (CU078_05975) ompA 1072892..1073932 (+) 1041 WP_000750416.1 porin OmpA -
  CU078_RS05980 (CU078_05980) matP 1074008..1074460 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CU078_RS05985 (CU078_05985) ycbZ 1074646..1076406 (+) 1761 WP_072644848.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=255654 CU078_RS05960 WP_000839153.1 1071178..1071807(-) (sxy/tfoX) [Escherichia coli strain CREC-591]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=255654 CU078_RS05960 WP_000839153.1 1071178..1071807(-) (sxy/tfoX) [Escherichia coli strain CREC-591]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment