Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CU081_RS19935 Genome accession   NZ_CP024812
Coordinates   3971224..3971850 (-) Length   208 a.a.
NCBI ID   WP_023315767.1    Uniprot ID   A0A837FJ36
Organism   Enterobacter sp. CRENT-193     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3966224..3976850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU081_RS19920 (CU081_19915) helD 3966463..3968517 (-) 2055 WP_022650745.1 DNA helicase IV -
  CU081_RS19925 (CU081_19920) - 3968640..3969086 (+) 447 WP_003858149.1 YccF domain-containing protein -
  CU081_RS19930 (CU081_19925) yccS 3969105..3971267 (+) 2163 WP_022650744.1 YccS family putative transporter -
  CU081_RS19935 (CU081_19930) sxy/tfoX 3971224..3971850 (-) 627 WP_023315767.1 TfoX/Sxy family DNA transformation protein Regulator
  CU081_RS19940 (CU081_19935) sulA 3972068..3972577 (+) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  CU081_RS19945 (CU081_19940) ompA 3972934..3973986 (+) 1053 WP_003858156.1 porin OmpA -
  CU081_RS19950 (CU081_19945) matP 3974052..3974504 (-) 453 WP_003858158.1 macrodomain Ter protein MatP -
  CU081_RS19955 (CU081_19950) - 3974691..3976451 (+) 1761 WP_022650741.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.4592

>NTDB_id=255626 CU081_RS19935 WP_023315767.1 3971224..3971850(-) (sxy/tfoX) [Enterobacter sp. CRENT-193]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=255626 CU081_RS19935 WP_023315767.1 3971224..3971850(-) (sxy/tfoX) [Enterobacter sp. CRENT-193]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment